Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR7500320/__temp__ Sequenced Read Pairs: 111,559,691 Normal Paired: 109,645,822 (98.28%) Chimeric Paired: 10,227 (0.01%) Chimeric Ambiguous: 4,223 (0.00%) Unmapped: 1,899,419 (1.70%) Ligation Motif Present: 14,396 (0.01%) Alignable (Normal+Chimeric Paired): 109,656,049 (98.29%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-23T17:45:09,414] [Globals.java:138] [main] Development mode is enabled Unique Reads: 45,708,177 (40.97%) PCR Duplicates: 63,947,872 (57.32%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 52,032,627 Intra-fragment Reads: 24,137,901 (21.64% / 52.81%) Below MAPQ Threshold: 6,012,618 (5.39% / 13.15%) Hi-C Contacts: 15,557,658 (13.95% / 34.04%) Ligation Motif Present: 6,212 (0.01% / 0.01%) 3' Bias (Long Range): 80% - 20% Pair Type %(L-I-O-R): 25% - 24% - 25% - 26% Inter-chromosomal: 2,089,351 (1.87% / 4.57%) Intra-chromosomal: 13,468,307 (12.07% / 29.47%) Short Range (<20Kb): 8,616,719 (7.72% / 18.85%) Long Range (>20Kb): 4,851,563 (4.35% / 10.61%)