Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR7500320/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  111,559,691
 Normal Paired: 109,645,822 (98.28%)
 Chimeric Paired: 10,227 (0.01%)
 Chimeric Ambiguous: 4,223 (0.00%)
 Unmapped: 1,899,419 (1.70%)
 Ligation Motif Present: 14,396 (0.01%)
Alignable (Normal+Chimeric Paired): 109,656,049 (98.29%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-23T17:45:09,414]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 45,708,177 (40.97%)
PCR Duplicates: 63,947,872 (57.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 52,032,627
Intra-fragment Reads: 24,137,901 (21.64% / 52.81%)
Below MAPQ Threshold: 6,012,618 (5.39% / 13.15%)
Hi-C Contacts: 15,557,658 (13.95% / 34.04%)
 Ligation Motif Present: 6,212  (0.01% / 0.01%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 24% - 25% - 26%
Inter-chromosomal: 2,089,351  (1.87% / 4.57%)
Intra-chromosomal: 13,468,307  (12.07% / 29.47%)
Short Range (<20Kb): 8,616,719  (7.72% / 18.85%)
Long Range (>20Kb): 4,851,563  (4.35% / 10.61%)